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生物保护期刊数据策略技能

用于为《保护生物学》期刊稿件准备数据可用性声明及数据/代码存档。该期刊(Wiley/SCB)要求研究/综述文章提供数据可用性声明,鼓励数据共享,并要求保护敏感物种数据。此技能仅协助准备材料,不豁免要求。

生物保护期刊数据策略技能 是什么?

这项技能专为向《保护生物学》(Conservation Biology)投稿的研究人员设计,旨在规范并简化数据可用性声明和附属存档的生成流程。该期刊采用Wiley“鼓励共享”标准,因此技能的核心是引导用户将可共享的数据与代码存入具备持久标识符的认可库中(如Dryad、Zenodo),并为因敏感物种、隐私或法律限制而无法公开的数据提供明确的说明与替代方案(如掩码位置或提供合成数据)。 技能覆盖从触发条件(如稿件接近接收)、材料准备清单到反模式警示的完整操作链,并包含一个“运行检查”模块,用于评估稿件在科学证据与政策行动间的衔接度。它创建了一个“主张-证据-风险”决策分类账,指导用户逐项排查,确保数据声明、代码可复现性、敏感信息保护等关键点均符合期刊要求。最终输出格式化为清单,直接给出存档就绪状态和数据策略评估。

兼容平台~Claude Code~Codex CLI~Cursor
npx skills add https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/HEAD/Conservation-Biology-Skills/skills/conbio-reporting-and-data-policy

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文档

报告与数据政策(conbio-reporting-and-data-policy)

保护生物学要求研究/综述文章提供数据可用性声明。该期刊在Wiley数据共享分级中属于**“鼓励共享”级别,因此本包的运行标准为:将可共享的数据和代码存放在合适的库(如Dryad、Zenodo、Figshare、GenBank)中,并附上持久标识符**;当数据无法共享时,记录限制原因。在写作过程中逐步构建数据包,以免在稿件接收环节出现延误。

何时触发

  • 正在撰写数据可用性声明并整理存档
  • 稿件即将被接收,需要准备好存储材料
  • 数据无法完全共享(敏感物种、隐私、法律/提供者限制)
  • 综述或整合分析中,应共享经过筛选的研究数据集

需要准备的内容

  1. 数据可用性声明。 在稿件中简短陈述数据和代码的存放位置(库+DOI/标识符),或者说明无法共享的原因及如何获取数据。
  2. 可共享数据存入库。 将可共享的数据和代码放入有持久标识符和保存保障的认可库中——而非个人网站或临时云链接。Dryad广泛应用于生态/保护领域;代码较重的工作也可使用Zenodo/GitHub-Zenodo。
  3. 定量材料。 足以复现所有报告结果的数据、代码和文档:主脚本+README+固定版本+随机种子。
  4. 综述材料。 对于综述/元分析,共享筛选决策、纳入研究列表和提取的效应量。

敏感物种与受限数据(保护领域的特殊责任)

  • 保护受威胁类群。 对于受威胁、被利用或被非法贸易的物种,掩码或粗化精确地点(巢穴、洞穴、栖息地、种群),使存档无法帮助偷猎或干扰;并说明已采取此类措施。
  • 受限数据。 如果数据受限(原住民主权、协议约束、隐私),解释原因,提供他人申请访问的指引,并尽可能提供合成或聚合数据,使用户能够检验代码运行。

边写边做的清单

  • 一个主脚本能从原始/构建数据复现每一个表格和图形
  • README 记录数据来源、构建步骤及如何复现每个展示内容
  • 为每个随机步骤设置并报告随机种子
  • 软件/包的版本固定(renv.lock / requirements.txt / 记录安装情况)
  • 数据可用性声明草稿包含库+标识符或限制/访问路径
  • 敏感地点已掩码/粗化;掩码已标注
  • 受限数据:原因+访问说明+合成/聚合替代数据

反模式

  • 将数据存储视为发表后的后置事项
  • 使用个人URL而非持久标识符库
  • 公布受威胁或非法贸易物种的精确位置
  • 声称数据受限却未提供访问路径或合成替代
  • 无文档、无种子、无版本固定的代码“只能在我机器上运行”

针对保护生物学的运行检查

将此作为第二轮能力检查。首先锁定物种/系统的威胁、保护决策、与行动相关的不确定性;然后检验稿件是否能回答保护科学审稿人关于证据是否改变了生物多样性、管理或政策行动的问题。

  • 主要行动: 返回一个主张-证据-风险分类账;每条建议必须指向稿件的具体位置或缺失的文件。
  • 决策分类账: 返回主张 / 证据 / 阻断 / 下一步编辑各行,以便下一轮直接修正稿件。
  • 邻近期刊测试: 与《Biological Conservation》(应用保护广度)、《Global Change Biology》(气候/生态系统过程)、《Ecology Letters》(理论生态学)对比;若邻近期刊拥有更强的读者群定位,则建议在润色前改投。
  • 可投稿性门控: 在给出最终建议前,重新打开resources/official-source-map.md查阅上传周规则,并指出唯一一项可能改变建议的在线检查项。

输出格式

【库】Dryad / Zenodo / 其他 —— 数据包已就绪?[Y/N]
【数据可用性声明】已草拟并包含DOI/标识符?[Y/N]
【可复现表格/图形?】主脚本已在本地验证?[Y/N]
【文档】README + 来源 + 种子 + 固定版本?[Y/N]
【敏感数据】地点已掩码/受限数据访问路径?[Y/N/NA]
【下一步】conbio-writing-style

补充资源

Individual skills in this repo

This repo contains 14 individual skills — each has its own dedicated page.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the data-availability statement and reproducibility materials for a Demography (PAA / Duke University Press) manuscript. Demography requires a data availability statement at acceptance with persistent identifiers and encourages reproducible, commented code; it hosts no repository, so authors deposit in a FAIR repository. Covers restricted-data exemptions. Prepares the materials; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Light: Science & Applications or deciding whether a photonics manuscript fits this venue. Encodes the journal's fit, the Nature-Portfolio significance bar, optical-measurement rigor, open-access house style, the Light-vs-Optica-vs-review routing, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Biomedical Engineering or deciding whether a biomedical-engineering / health-technology manuscript fits this venue. Encodes the journal's fit, the Nature-style biomedical-significance and translational bar, validation and evidence rigor, house style, the device-vs-biomaterials-vs-clinical routing, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Electronics or deciding whether an electronic-devices / circuits / systems manuscript fits this venue. Encodes the journal's fit, the Nature-style significance and field-advancing bar, device-and-system measurement rigor, house style, the device-vs-materials-vs-systems routing, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Biotechnology or deciding whether a biotechnology/enabling-methods manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Cell Biology or deciding whether a cell-biology manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Geoscience or deciding whether an earth science manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Materials or deciding whether a materials science manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Nanotechnology or deciding whether a nanotechnology manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the Data Availability Statement and replication materials for a Governance: An International Journal of Policy, Administration, and Institutions manuscript. Governance requires the statement (mandatory) and encourages sharing data/code in a DOI-citable repository, but does not run a verified pre-publication reproduction check like APSR. Builds the statement and materials; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the replication/transparency materials for an International Organization (IO) manuscript. IO's signature requirement is verification BEFORE final acceptance — the editorial staff request data and code at conditional acceptance, IO staff re-run quantitative results and check proofs of formal models, and editors withhold final acceptance until all reported results are confirmed; materials then deposit to the IO Dataverse with a DOI and a Data Availability Statement. Prepares the package; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the replication / transparency materials for a Journal of Policy Analysis and Management (JPAM) manuscript — depositing data and code in a public repository so the reported results can be reproduced, with an honest exemption path for restricted administrative data. Prepares the package; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the data-availability statement and reproducibility materials for a Population and Development Review (PDR, Wiley / Population Council) manuscript. PDR follows Wiley's data-sharing and research-integrity expectations — a data availability statement, ORCID, and reproducible, well-documented materials deposited in a FAIR repository (verify current policy). Covers restricted-data exemptions. Prepares the materials; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the transparency materials for a Public Opinion Quarterly (POQ) manuscript — the AAPOR-standard "Appendix A: Disclosure Elements", the replication package deposited to POQ's Harvard Dataverse, and the Data Availability Statement. POQ requires materials that reproduce exactly all published tables and figures, archived before typesetting. Prepares the materials; it does not waive requirements.

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