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brycewang-stanford/Awesome-Journal-Skills

Use when preparing the replication/transparency materials for an International Organization (IO) manuscript. IO's signature requirement is verification BEFORE final acceptance — the editorial staff request data and code at conditional acceptance, IO staff re-run quantitative results and check proofs of formal models, and editors withhold final acceptance until all reported results are confirmed; materials then deposit to the IO Dataverse with a DOI and a Data Availability Statement. Prepares the package; it does not waive requirements.

What is Awesome-Journal-Skills?

Awesome-Journal-Skills is a Claude Code agent skill that use when preparing the replication/transparency materials for an International Organization (IO) manuscript. IO's signature requirement is verification BEFORE final acceptance — the editorial staff request data and code at conditional acceptance, IO staff re-run quantitative results and check proofs of formal models, and editors withhold final acceptance until all reported results are confirmed; materials then deposit to the IO Dataverse with a DOI and a Data Availability Statement. Prepares the package; it does not waive requirements.

Works with~Claude Code~Codex CLI~Cursor
npx skills add https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/HEAD/International-Organization-Skills/skills/io-transparency-and-data-policy

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Documentation

Transparency & Data Policy (io-transparency-and-data-policy)

IO does not just ask for data — its editorial staff re-run your quantitative results and verify the proofs of your formal models, and editors will not issue final acceptance until all reported analyses are confirmed. This pre-publication verification is IO's signature. Build the package as you analyze so conditional acceptance does not stall.

When to trigger

  • Building the reproducibility/replication package (start during analysis, not at acceptance)
  • A manuscript reached conditional acceptance and the editorial staff requested data and code
  • You have a formal model whose proofs IO staff will verify
  • Data cannot be fully shared (privacy, ethics, legal/provider restrictions) and you need the path
  • Writing the Data Availability Statement

What IO requires (verify current wording on the policy page — 待核实 on verbatim text)

  1. No data at initial submission. Authors do not provide data or command files when first submitting (consistent with double-blind review).
  2. Data requested at conditional acceptance. The editorial staff request the data and command files at the time of conditional acceptance.
  3. Verification before final acceptance. For papers using quantitative data, IO staff re-run the code to confirm the reported results; for formal papers, IO staff verify the proofs. Editors do not issue final acceptance until all results of all reported analyses are confirmed. Treat this as a real check, not a formality.
  4. Deposit to the IO Dataverse. On final acceptance, upload quantitative datasets and supporting files to the IO Dataverse on Harvard Dataverse; the entry mints a DOI to be cited in the published article. Not a personal website or generic cloud link.
  5. Data Availability Statement. A DAS is required for quantitative articles (encouraged for qualitative), appearing before the reference list.
  6. Qualitative materials. Authors are strongly encouraged to deposit qualitative data at the Qualitative Data Repository (QDR) at Syracuse, with access controls where needed.

When data cannot be shared (exemption path)

  • Explain why the relevant data are not available (ethical/privacy concerns or legal restrictions by the provider).
  • Provide README instructions on exactly how others can obtain the data (access process, application, provider contact).
  • Where possible, provide synthetic or simulated data so the code runs end-to-end. (Confirm the current exemption procedure on the live policy page — 待核实.)

Build-as-you-go checklist

  • One master script regenerates every table and figure from raw/constructed data
  • README documents data provenance, construction steps, software, and how to reproduce each exhibit
  • Seeds set and reported for every stochastic step
  • Software/package versions pinned (renv.lock / requirements.txt / recorded installs)
  • Exhibit numbers in the manuscript match the package output exactly (IO staff re-run them)
  • Formal models: a complete, checkable proof appendix for IO staff to verify
  • Data Availability Statement drafted (before the reference list)
  • Restricted data: exemption note + access instructions + synthetic data where feasible
  • Qualitative data: QDR deposit considered; sources documented for the claims

Anti-patterns

  • Treating the deposit as a post-publication afterthought (it gates final acceptance)
  • Depositing code that does not actually reproduce the printed tables/figures (IO re-runs it)
  • A formal model with hand-waved or incomplete proofs (IO verifies proofs)
  • A personal URL instead of the IO Dataverse; no DOI cited in the article
  • Claiming data are restricted without giving an access path or synthetic substitute
  • Forgetting the Data Availability Statement

Output format

【Stage】initial (no data) / conditional acceptance (data requested) / pre-final (verification)
【Quantitative reproduces?】master script re-runs all tables/figures locally? [Y/N]
【Formal proofs】complete, checkable proof appendix? [Y/N/NA]
【Repository】IO Dataverse (Harvard) staged + DOI plan? [Y/N]
【Data Availability Statement】drafted before references? [Y/N]
【Restricted data?】exemption note + access path + synthetic data?
【Qualitative】QDR deposit + sources documented? [Y/N/NA]
【Next】io-review-process

Supplementary resources

Individual skills in this repo

This repo contains 14 individual skills — each has its own dedicated page.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the data-availability statement and the data/code archive for a Conservation Biology manuscript. The journal (Wiley/SCB) requires a data-availability statement for research/synthesis articles, encourages data sharing, and requires sensitive species data to be protected. Prepares the package; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the data-availability statement and reproducibility materials for a Demography (PAA / Duke University Press) manuscript. Demography requires a data availability statement at acceptance with persistent identifiers and encourages reproducible, commented code; it hosts no repository, so authors deposit in a FAIR repository. Covers restricted-data exemptions. Prepares the materials; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Light: Science & Applications or deciding whether a photonics manuscript fits this venue. Encodes the journal's fit, the Nature-Portfolio significance bar, optical-measurement rigor, open-access house style, the Light-vs-Optica-vs-review routing, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Biomedical Engineering or deciding whether a biomedical-engineering / health-technology manuscript fits this venue. Encodes the journal's fit, the Nature-style biomedical-significance and translational bar, validation and evidence rigor, house style, the device-vs-biomaterials-vs-clinical routing, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Electronics or deciding whether an electronic-devices / circuits / systems manuscript fits this venue. Encodes the journal's fit, the Nature-style significance and field-advancing bar, device-and-system measurement rigor, house style, the device-vs-materials-vs-systems routing, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Biotechnology or deciding whether a biotechnology/enabling-methods manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Cell Biology or deciding whether a cell-biology manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Geoscience or deciding whether an earth science manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Materials or deciding whether a materials science manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when targeting Nature Nanotechnology or deciding whether a nanotechnology manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the Data Availability Statement and replication materials for a Governance: An International Journal of Policy, Administration, and Institutions manuscript. Governance requires the statement (mandatory) and encourages sharing data/code in a DOI-citable repository, but does not run a verified pre-publication reproduction check like APSR. Builds the statement and materials; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the replication / transparency materials for a Journal of Policy Analysis and Management (JPAM) manuscript — depositing data and code in a public repository so the reported results can be reproduced, with an honest exemption path for restricted administrative data. Prepares the package; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the data-availability statement and reproducibility materials for a Population and Development Review (PDR, Wiley / Population Council) manuscript. PDR follows Wiley's data-sharing and research-integrity expectations — a data availability statement, ORCID, and reproducible, well-documented materials deposited in a FAIR repository (verify current policy). Covers restricted-data exemptions. Prepares the materials; it does not waive requirements.

brycewang-stanford/Awesome-Journal-Skills

Use when preparing the transparency materials for a Public Opinion Quarterly (POQ) manuscript — the AAPOR-standard "Appendix A: Disclosure Elements", the replication package deposited to POQ's Harvard Dataverse, and the Data Availability Statement. POQ requires materials that reproduce exactly all published tables and figures, archived before typesetting. Prepares the materials; it does not waive requirements.

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