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affaan-m/gget

gget CLI 與 Python 工作流程,用於快速基因組資料庫查詢、序列查找、BLAST 風格搜尋、富集分析檢查以及可重現的生物資訊證據日誌。

gget 是什麼?

此技能整合了 gget 工具,提供一個 CLI 與 Python 工作流程,專門用於快速查詢基因組資料庫、序列查找、BLAST 風格搜尋、基因富集分析檢查,並生成可重現的生物資訊證據日誌。gget 是一個開源的生物資訊學工具,支援多種資料庫(如 NCBI、Ensembl、UniProt),能直接從終端機或 Python 腳本中進行高效查詢,無需繁瑣的網頁瀏覽或手動下載。對於開發者或研究人員而言,此技能可大幅簡化常見的基因組分析任務,例如根據基因名稱擷取序列、執行同源性比對、或檢查特定基因在某一途徑中的富集情況。此技能適用於 Claude Code、Cursor 等支援 CLI 和 Python 的 AI Agent 平台,讓使用者能以自然語言指令快速執行複雜的生物資訊查詢,並自動記錄所有查詢步驟與結果,確保分析的可重現性。

相容平台~Claude Code~Codex CLI~Cursor
npx skills add https://github.com/affaan-m/everything-claude-code/tree/main/skills/gget

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說明文件

gget 是做什麼的?

gget CLI 與 Python 工作流程,用於快速基因組資料庫查詢、序列查找、BLAST 風格搜尋、富集分析檢查以及可重現的生物資訊證據日誌。

Individual skills in this repo

This repo contains 20 individual skills — each has its own dedicated page.

accessibility

Design, implement, and audit inclusive digital products using WCAG 2.2 Level AA. Use when building or auditing UI that must meet WCAG 2.2 Level AA, or when reviewing a change for keyboard, contrast, or screen-reader support.

affaan-m/claude-api

Anthropic Claude API patterns for Python and TypeScript. Covers Messages API, streaming, tool use, vision, extended thinking, batches, prompt caching, and Claude Agent SDK. Use when building applications with the Claude API or Anthropic SDKs.

affaan-m/everything-claude-code

End-to-end marketing campaign planning and execution. Covers audience research, positioning, campaign angle definition, landing page copy, email sequences, social posts, ad copy, short-form video scripts, and content calendars. Use as the orchestration layer for multi-channel product launches. Use when planning or executing a multi-channel product launch, or producing landing page, email, social, or ad copy.

affaan-m/everything-claude-code

Development conventions and patterns for everything-claude-code. JavaScript project with conventional commits.

affaan-m/everything-claude-code-conventions

Development conventions and patterns for everything-claude-code. JavaScript project with conventional commits.

affaan-m/frontend-design

Create distinctive, production-grade frontend interfaces with high design quality. Use when the user asks to build web components, pages, or applications and the visual direction matters as much as the code quality.

affaan-m/literature-review

Systematic literature-review workflow for academic, biomedical, technical, and scientific topics, including search planning, source screening, synthesis, citation checks, and evidence logging.

affaan-m/motion-ui

Production-ready UI motion system for React/Next.js. Use when implementing animations, transitions, or motion patterns.

affaan-m/project-guidelines-example

Example project-specific skill template based on a real production application.

affaan-m/pubmed-database

Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring.

affaan-m/scholar-evaluation

Structured scholarly-work evaluation for papers, proposals, literature reviews, methods sections, evidence quality, citation support, and research-writing feedback.

affaan-m/uspto-database

USPTO patent and trademark data workflow for official record lookup, PatentSearch queries, TSDR checks, assignment data, and reproducible IP research logs.

agent-architecture-audit

Full-stack diagnostic for agent and LLM applications. Audits the 12-layer agent stack for wrapper regression, memory pollution, tool discipline failures, hidden repair loops, and rendering corruption. Produces severity-ranked findings with code-first fixes. Essential for developers building agent applications, autonomous loops, or any LLM-powered feature. Use when an agent or LLM feature misbehaves and the failing layer is unknown, or before shipping an agent stack.

agent-eval

Head-to-head comparison of coding agents (Claude Code, Aider, Codex, etc.) on custom tasks with pass rate, cost, time, and consistency metrics. Use when choosing between coding agents, or when a change to an agent setup needs measured pass rate, cost, and time rather than an impression.

agent-harness-construction

Design and optimize AI agent action spaces, tool definitions, and observation formatting for higher completion rates. Use when defining or revising an agent

agentic-engineering

Operate as an agentic engineer using eval-first execution, decomposition, and cost-aware model routing. Use when planning or executing engineering work that agents will carry out end to end.

agentic-os

Build persistent multi-agent operating systems on Claude Code. Covers kernel architecture, specialist agents, slash commands, file-based memory, scheduled automation, and state management without external databases. Use when building a persistent multi-agent system on Claude Code with its own memory, commands, and scheduling.

agent-introspection-debugging

Structured self-debugging workflow for AI agent failures using capture, diagnosis, contained recovery, and introspection reports. Use when an agent run fails and you need a reproducible diagnosis instead of a retry.

agent-payment-x402

Add x402 payment execution to AI agents with per-task budgets, spending controls, and non-custodial wallets. Supports Base through agentwallet-sdk and X Layer through OKX Payments / OKX Agent Payments Protocol. Use when an agent must pay for something itself and needs per-task budgets, spending controls, and a non-custodial wallet.

agent-self-evaluation

Use after completing any non-trivial task. The agent self-rates its output on 5 axes — accuracy, completeness, clarity, actionability, conciseness — with concrete evidence per criterion. Produces a structured 1-5 scorecard with specific improvement suggestions.

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