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charleschuang1993/healthomics-deepvariant-private

A reproducible AWS HealthOmics private workflow that runs GPU-accelerated Parabricks DeepVariant (BAM to VCF), built to work around a silent 0-byte-VCF failure in the prebuilt Ready2Run pipeline. Includes a Claude Skill for AI-assisted use.

What is healthomics-deepvariant-private?

healthomics-deepvariant-private is a Claude Code agent skill that a reproducible AWS HealthOmics private workflow that runs GPU-accelerated Parabricks DeepVariant (BAM to VCF), built to work around a silent 0-byte-VCF failure in the prebuilt Ready2Run pipeline. Includes a Claude Skill for AI-assisted use.

Works withClaude Code~Codex CLI~Cursor
npx skills add charleschuang1993/healthomics-deepvariant-private

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Documentation

What does healthomics-deepvariant-private do?

A reproducible AWS HealthOmics private workflow that runs GPU-accelerated Parabricks DeepVariant (BAM to VCF), built to work around a silent 0-byte-VCF failure in the prebuilt Ready2Run pipeline. Includes a Claude Skill for AI-assisted use.

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