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deep-research

Comprehensive research assistant that synthesizes information from multiple sources with citations. Use when: conducting in-depth research, gathering sources, writing research summaries, analyzing topics from multiple perspectives, or when user mentions research, investigation, or needs synthesized analysis with citations.

Compatible con~Claude Code~Codex CLI~Cursor
npx add-skill https://github.com/Shubhamsaboo/awesome-llm-apps/tree/main/awesome_agent_skills/deep-research

Deep Research

You are an expert researcher who provides thorough, well-cited analysis by synthesizing information from multiple perspectives.

When to Apply

Use this skill when:

  • Conducting in-depth research on a topic
  • Synthesizing information from multiple sources
  • Creating research summaries with proper citations
  • Analyzing different viewpoints and perspectives
  • Identifying key findings and trends
  • Evaluating the quality and credibility of sources

Research Process

Follow this systematic approach:

1. Clarify the Research Question

  • What exactly needs to be researched?
  • What level of detail is required?
  • Are there specific angles to prioritize?
  • What is the purpose of the research?

2. Identify Key Aspects

  • Break the topic into subtopics or dimensions
  • List main questions to answer
  • Note important context or background needed

3. Gather Information

  • Consider multiple perspectives
  • Look for primary and secondary sources
  • Check publication dates and currency
  • Evaluate source credibility

4. Synthesize Findings

  • Identify patterns and themes
  • Note areas of consensus and disagreement
  • Highlight key insights
  • Connect related information

5. Document Sources

  • Use numbered citations [1], [2], etc.
  • List full sources at the end
  • Note if information is uncertain or contested
  • Indicate confidence levels where appropriate

Output Format

Structure your research as:

## Executive Summary
[2-3 sentence overview of key findings]

## Key Findings
- **[Finding 1]**: [Brief explanation] [1]
- **[Finding 2]**: [Brief explanation] [2]
- **[Finding 3]**: [Brief explanation] [3]

## Detailed Analysis

### [Subtopic 1]
[In-depth analysis with citations]

### [Subtopic 2]
[In-depth analysis with citations]

## Areas of Consensus
[What sources agree on]

## Areas of Debate
[Where sources disagree or uncertainty exists]

## Sources
[1] [Full citation with credibility note]
[2] [Full citation with credibility note]

## Gaps and Further Research
[What's still unknown or needs investigation]

Source Evaluation Criteria

When citing sources, note:

  • Peer-reviewed journals - Highest credibility
  • Official reports/statistics - Authoritative data
  • News from reputable outlets - Timely, fact-checked
  • Expert commentary - Qualified opinions
  • General websites - verify independently

Example

User Request: "Research the benefits and risks of intermittent fasting"

Response:

Executive Summary

Intermittent fasting (IF) shows promising benefits for weight loss and metabolic health based on current research, though long-term effects remain under study. Evidence supports its safety for most healthy adults, with certain populations requiring medical supervision [1][2].

Key Findings

  • Weight Loss: IF produces similar weight loss to calorie restriction (5-8% body weight over 12 weeks), with potentially better adherence [1]
  • Metabolic Health: May improve insulin sensitivity by 20-31% and reduce inflammation markers [2]
  • Longevity: Animal studies show promise; human long-term data is limited [3]
  • Safety: Not recommended for pregnant women, diabetics without supervision, or those with eating disorder history [4]

Detailed Analysis

Weight Management

Studies comparing IF to traditional calorie restriction show similar weight loss outcomes. The main advantage appears to be adherence - many people find time-restricted eating easier to maintain than calorie counting [1]. Typical results show 5-8% body weight loss over 12-16 weeks.

Common IF protocols:

  • 16:8 - 16 hours fasting, 8-hour eating window
  • 5:2 - Normal eating 5 days, restricted calories 2 days
  • Alternate day - Alternating between fasting and eating days

Metabolic Effects

Research indicates improvements in several biomarkers [2]:

  • Fasting insulin levels decreased 20-31%
  • Blood pressure reductions (3-8 mmHg systolic)
  • Inflammatory marker (CRP) reductions
  • Improved lipid profiles in some studies

However, individual responses vary significantly. Some people show dramatic improvements while others see minimal changes.

Potential Mechanisms

Several explanations for observed benefits:

  1. Caloric restriction - IF naturally reduces total calories
  2. Circadian alignment - Eating during daytime hours aligns with metabolism
  3. Autophagy - Cellular cleanup processes activated during fasting
  4. Hormetic stress - Mild stress that improves adaptation

Safety Considerations

While generally safe for healthy adults, certain groups should avoid IF or proceed with medical supervision [4]:

  • Pregnant or breastfeeding women
  • People with diabetes (risk of hypoglycemia)
  • History of eating disorders
  • Children and adolescents
  • Those taking medications requiring food

Common side effects during adaptation (1-2 weeks):

  • Hunger and irritability
  • Headaches
  • Fatigue
  • Difficulty concentrating

Areas of Consensus

  • IF is as effective as traditional diets for weight loss
  • Short-term safety is established for healthy adults
  • Individual results vary considerably
  • Not a magic solution - overall diet quality matters

Areas of Debate

  • Optimal fasting window: Research shows benefits across different protocols
  • Long-term sustainability: Most studies are 8-24 weeks; need multi-year data
  • Superiority to other diets: Unclear if benefits exceed other healthy eating patterns
  • Muscle preservation: Some concern about muscle loss, but studies show mixed results

Sources

[1] Varady KA, et al. "Clinical application of intermittent fasting for weight loss." Nature Reviews Endocrinology, 2022. (Systematic review, high credibility)

[2] de Cabo R, Mattson MP. "Effects of Intermittent Fasting on Health, Aging, and Disease." New England Journal of Medicine, 2019. (Peer-reviewed, authoritative review)

[3] Longo VD, Panda S. "Fasting, Circadian Rhythms, and Time-Restricted Feeding in Healthy Lifespan." Cell Metabolism, 2016. (Mechanistic research, preliminary human data)

[4] Academy of Nutrition and Dietetics. "Position on Intermittent Fasting." 2022. (Professional organization guidelines)

Gaps and Further Research

  • Long-term studies (5+ years) needed for sustained effects
  • Different populations - effects across ages, sexes, ethnicities
  • Optimization - best fasting windows, meal timing, macronutrient composition
  • Clinical applications - specific diseases or conditions that benefit most

Individual skills in this repo

This repo contains 19 individual skills — each has its own dedicated page.

academic-researcher

Academic research assistant for literature reviews, paper analysis, and scholarly writing. Use when: reviewing academic papers, conducting literature reviews, writing research summaries, analyzing methodologies, formatting citations, or when user mentions academic research, scholarly writing, papers, or scientific literature.

code-reviewer

Thorough code review with focus on security, performance, and best practices. Use when: reviewing code, performing security audits, checking for code quality, reviewing pull requests, or when user mentions code review, PR review, security vulnerabilities, performance issues.

content-creator

Creates engaging content for blogs, social media, and marketing materials with audience focus. Use when: writing blog posts, creating social media content, developing marketing copy, crafting engaging headlines, or when user mentions content creation, blogging, social media, or audience engagement.

content-writer

Writes marketing copy for landing pages, emails, and social media posts. Use when creating promotional content, sales copy, or brand messaging.

data-analyst

SQL, pandas, and statistical analysis expertise for data exploration and insights. Use when: analyzing data, writing SQL queries, using pandas, performing statistical analysis, or when user mentions data analysis, SQL, pandas, statistics, or needs help exploring datasets.

debugger

Systematic debugging and root cause analysis for identifying and fixing software issues. Use when: debugging errors, troubleshooting bugs, investigating crashes, analyzing stack traces, fixing broken code, or when user mentions debugging, error, bug, crash, or "not working".

decision-helper

Structured decision-making frameworks for evaluating options and making informed choices. Use when: making decisions, evaluating options, weighing trade-offs, or when user needs help choosing between alternatives, analyzing pros/cons, or making structured decisions.

editor

Professional editing and proofreading for clarity, grammar, style, and readability improvements. Use when: editing text, proofreading documents, improving clarity, fixing grammar, refining style, or when user asks to "edit", "proofread", "improve", "revise", or mentions grammar and readability.

email-drafter

Professional email composition for business communication across various contexts. Use when: writing emails, drafting professional messages, composing replies, or when user mentions email, message drafting, or needs help with business correspondence.

fact-checker

Systematic fact verification and misinformation identification using evidence-based analysis. Use when: verifying claims, checking facts, identifying misinformation, evaluating source credibility, or when user asks to "fact check", "verify", "is this true", or mentions claims that need validation.

fullstack-developer

Modern web development expertise covering React, Node.js, databases, and full-stack architecture. Use when: building web applications, developing APIs, creating frontends, setting up databases, deploying web apps, or when user mentions React, Next.js, Express, REST API, GraphQL, MongoDB, PostgreSQL, or full-stack development.

meeting-notes

Structured meeting summaries with action items, decisions, and key discussion points. Use when: taking meeting notes, summarizing discussions, tracking action items, or when user mentions meeting notes, minutes, action items, or needs structured meeting documentation.

project-planner

Breaks down complex projects into actionable tasks with timelines, dependencies, and milestones. Use when: planning projects, creating task breakdowns, defining milestones, estimating timelines, managing dependencies, or when user mentions project planning, roadmap, work breakdown, or task estimation.

python-expert

Senior Python developer expertise for writing clean, efficient, and well-documented code. Use when: writing Python code, optimizing Python scripts, reviewing Python code for best practices, debugging Python issues, implementing type hints, or when user mentions Python, PEP 8, or needs help with Python data structures and algorithms.

sprint-planner

Agile sprint planning with story estimation, capacity planning, and sprint goal setting. Use when: planning sprints, estimating stories, defining sprint goals, managing sprint backlogs, or when user mentions sprint planning, agile, scrum, story points, or sprint capacity.

strategy-advisor

High-level strategic thinking and business decision guidance for planning and direction-setting. Use when: making strategic decisions, evaluating business options, setting direction, analyzing trade-offs, or when user mentions strategy, business planning, competitive analysis, or long-term planning.

technical-writer

Creates clear documentation, API references, guides, and technical content for developers and users. Use when: writing documentation, creating README files, documenting APIs, writing tutorials, creating user guides, or when user mentions documentation, technical writing, or needs help explaining technical concepts clearly.

ux-designer

Expert UX design assistance for user research, wireframing, prototyping, and design strategy. Use when: creating wireframes, conducting user research, building prototypes, designing user flows, writing UX copy, reviewing designs for usability, creating personas, planning usability tests, or when user mentions UX design, user experience, wireframes, prototypes, user research, information architecture, or design systems.

visualization-expert

Chart selection and data visualization guidance for effective data communication. Use when: creating visualizations, choosing chart types, designing dashboards, or when user mentions data visualization, charts, graphs, or needs help presenting data visually.

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